Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015930350.1_cds_XP_016477397.1_69134
CDS Infomation

[gene=LOC107798880] [db_xref=GeneID:107798880] [protein=LOW QUALITY PROTEIN: aspartyl protease family protein 2-like] [exception=unclassified translation discrepancy] [protein_id=XP_016477397.1] [location=complement(join(4879..5196,5198..6355))] [gbkey=CDS]
Sequence

ATGGAAGGAAAACCCATTTCCATTTCCTTCCTCTTCACTCTCTCCTCCATTTTCCTTTCC
CTCCTTGCCATTTCTGTGTCTTCCACTTCCCCTCAATACCAAACATTAGTCTTAAATTCC
CTCCCCAACTCCCAACCTCAGTCCCTCTCATGGGCTACCGAAGATTTCGAAGCCCAACTT
TCCGGCGATGGGTCAAACCCGGATCCGGATTACACACTTTCTGTACAGTTGCATCACGTC
GACTTAGTATCTCCTTCATCCTTCAATGCTACACCTCACACTTTGTTCAAACTCCGTCTC
CAACGTGACGCTGCTAGAGCTAAGGCACTTTCAGACCTCGCCGCAGCTAATATCACCGTT
GGCCGCCGCGGCGGTGGACACCATGTTGTCGGCGGCAGGGACTTCTCTAGTTCTGTTACT
TCTGGACTCGCTCAGGGTAGTGGTGAGTACTTCACGCGCCTAGGTGTTGGTACTCCTCCC
AAGTATGCTTACATGGTGTTGGACACTGGAAGTGACGTCGTTTGGATCCAGTGTTCCCCT
TGCAAGAAATGCTACACTCAATCTGACCCAGTTTTTGACCCGACGAAATCCTCCTCCTTC
CTTGGTGTTTCATGCGGGTCCCCCTTGTGCCGCCGATTGGATTCTCCGGGCTGTAACCGC
AAGAAGTGCCTTTACCAAGTTTCATACGGCGACGGTTCTTTCACCGTCGGTGATTTTTCA
ACTGAAACATTAACTTTCCGTAAAACACGTGTCAACAACGTGGCCCTTGGATGCGGCCAC
GATAATGAAGGTTTATTCGTGGGGGCCGCCGGGTTACTTGGTCTCGGACGGGGAAGACTG
TCATTTCCGACTCAAGCCGGTCGGAGATTTGGCCGGAAATTCTCCTACTGCCTTGTGGAC
CGATCTGCTTCCTCTAGACCATCCTATATAGTCTTCGGTGAATCAACAGTTTCTCGAACC
GCTGTGTTTACCCCACTCGTCACTAACCCAAAACTCGACACGTTTTACTACGTGGAGCTC
ACCGGAATCAGCGTCGGCGGCACTAGGGTTCCATCCATTAGGCCGTCACTGTTCAAACTA
GACGCAGCCGGTGATGGTGGGGTGATAGTGGATTCAGGAACATCAGTGACCCGGTTGACC
CGACCCGCTTACGTGGCGCTGAGGGACGCTTTCAGAATAGGTGCTGCAAATCTGAAGAGG
GCACCAGATTTCTCGTTGTTCGATACGTGTTTTGATCTGTCAGGGAAGACGGAAGTTAAA
GTGCCGACGGTGGTTCTGCATTTCAAGGGAGCTGACGTGTCATTGCCGGCGTCGAATTAC
TTGATTCCGGTGGACAGTGATGGAACATTCTGCTTCGCATTTGCAGGTACAATGAGTGGA
TTGTCAATAATTGGAAACATTCAGCAGCAAGGTTTTAGGGTAGTGTTTGATCTTGCTGGT
TCTCGCTTAGGATTTGCTCCTCGTGGCTGTGCTTAA

Peptide Sequence

PEP ID

XP_016477397.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: aspartyl protease family protein 2-like [Nicotiana tabacum]
Sequence

MEGKPISISFLFTLSSIFLSLLAISVSSTSPQYQTLVLNSLPNSQPQSLSWATEDFEAQL
SGDGSNPDPDYTLSVQLHHVDLVSPSSFNATPHTLFKLRLQRDAARAKALSDLAAANITV
GRRGGGHHVVGGRDFSSSVTSGLAQGSGEYFTRLGVGTPPKYAYMVLDTGSDVVWIQCSP
CKKCYTQSDPVFDPTKSSSFLGVSCGSPLCRRLDSPGCNRKKCLYQVSYGDGSFTVGDFS
TETLTFRKTRVNNVALGCGHDNEGLFVGAAGLLGLGRGRLSFPTQAGRRFGRKFSYCLVD
RSASSRPSYIVFGESTVSRTAVFTPLVTNPKLDTFYYVELTGISVGGTRVPSIRPSLFKL
DAAGDGGVIVDSGTSVTRLTRPAYVALRDAFRIGAANLKRAPDFSLFDTCFDLSGKTEVK
VPTVVLHFKGADVSLPASNYLIPVDSDGTFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAG
SRLGFAPRGCA

Transcript Sequence

Gene sequence data has not been registered.